Publications [pubmed] [google-scholar]

  • Maria Littmann, Katharina Selig, Liel Cohen-Lavi, Yotam Frank, Peter Hönigschmid, Evans Kataka, Anja Mösch, Kun Qian, Avihai Ron, Sebastian Schmid, Adam Sorbie, Liran Szlak, Ayana Dagan-Wiener, Nir Ben-Tal, Masha Y. Niv, Daniel Razansky, Björn W. Schuller, Donna Ankerst, Tomer Hertz & Burkhard Rost. Validity of machine learning in biology and medicine increased through collaborations across fields of expertise. Nature Machine Intelligence. 2020 Jan. doi:10.1038/s42256-019-0139-8

  • Liel Cohen†, Andrew Fiore-Gartland†, Adrienne G. Randolph, Angela Panoskaltsis-Mortari, Sook-San Wong, Jacqui Ralston, Timothy Wood, Ruth Seeds, Q. Sue Huang, Richard J. Webby, Paul G. Thomas and Tomer Hertz. A Modular Cytokine Analysis Method Reveals Novel Associations With Clinical Phenotypes and Identifies Sets of Co-signaling Cytokines Across Influenza Natural Infection Cohorts and Healthy Controls. Front Immunol. 2019 Jun 18;10:1338. doi: 10.3389/fimmu.2019.01338. PubMed PMID: 31275311; PubMed Central PMCID: PMC6594355.

  • Andrew Fiore-Gartland, Angela Panoskaltsis-Mortari, Anna A. Agan, Anushay J. Mistry, Paul G. Thomas, Michael A. Matthay, PALISI PICFlu Investigators, Tomer Hertz,† and Adrienne G. Randolph†. Cytokine Profiles of Severe Influenza Virus-Related Complications in Children. Front Immunol. 2017; 8: 1423. Published online 2017 Nov 6. doi:  10.3389/fimmu.2017.01423

  • Pradyot Dash, Andrew J. Fiore-Gartland, Tomer Hertz, George C. Wang, Shalini Sharma, Aisha Souquette, Jeremy Chase Crawford, E. Bridie Clemens, Thi H. O. Nguyen, Katherine Kedzierska, Nicole L. La Gruta, Philip Bradley and Paul G. Thomas. Quantifiable predictive features define epitope- specific T cell receptor repertoires. Nature. 2017 Jul 6;547(7661):89-93. doi: 10.1038/nature22383. Epub 2017 Jun 21. PMID:28636592.

  • Tomer Hertz†, P. Robert Beatty†, Zachary MacMillen, Sarah S. Killingbeck, Chunling Wang, and Eva Harris. Antibody Epitopes Identified in Critical Regions of Dengue Virus Nonstructural 1 Protein in Mouse Vaccination and Natural Human Infections. Journal of Immunology 2017; 198:4025-4035; Pre-published online 5 April 2017; [† equally contributing authors]

  • Tomer Hertz†, Murray G. Logan†, Morganne Rolland, Craig A. Magaret, Cecilia Rademeyer, Andrew Fiore-Gartland, Paul T. Edlefsen, Allan DeCamp, Hasan Ahmed, Nobu Ngandu, Breandon B. Larsen, Nicole Frahm, J Marais, R Thebus, Daniel Geraghty, John Hural, Larry Corey, James Kublin, Glenda Gray, M. Julie McElrath, James I. Mullins, Peter B. Gilbert, and Carolyn Williamson.  A Study of Vaccine-induced Immune Pressure on Breakthrough Infections in the Phambili Phase 2b HIV-1 Vaccine Efficacy Trial. Accepted to Vaccine, July 2016.  

  • Stephen R. Walsh, Zoe Moodie, Andrew J. Fiore-Gartland, Cecilia Morgan, Marissa B. Wilck, Scott M. Hammer, Susan P. Buchbinder, Spyros A. Kalams, Paul A. Goepfert, Mark J. Mulligan, Michael C. Keefer, Lindsey R.Baden, Edith M. Swann, Shannon Grant, Hasan Ahmed, Fusheng L, Tomer Hertz, Steven G. Self, David Friedrich, Nicole Frahm, Hua-Xin Liao,David C.Montefiori, Georgia D. Tomaras, M. Juliana McElrath, John Hural, Barney S. Graham, Xia Jin, the HVTN 083 Study Group, and the NIAID HIV Vaccine Trials Network. Vaccination with heterologous HIV envelope sequences and heterologous adenovirus vectors increases T cell responses to conserved regions (HVTN 083). Journal of Infectious Diseases. October 2015.

 

 

  • Paul T. Edlefsen*, Morgane Rolland*, Tomer Hertz*, Sodsai Tovanabutra, Andrew J. Gartland, Allan C. deCamp, Craig A. Magaret, Hasan Ahmed, Raphael Gottardo, Michal Juraska, Connor McCoy, Brendan B. Larsen, Eric Sanders-Buell, Chris Carrico, Sergey Menis, Meera Bose, RV144 Sequencing Team, MiguelA. Arroyo, Robert J. O’Connell, Sorachai Nitayaphan, Punnee Pitisuttithum,Jaranit Kaewkungwal, Supachai Rerks-Ngarm, Merlin L. Robb, Tatsiana Kirys, Ivelin S. Georgiev, Peter D. Kwong, Konrad Scheffler, Sergei L. Kosakovsky Pond, Jonathan M. Carlson, Nelson L. Michael, William R. Schief, James I. Mullins, Jerome H. Kim, Peter B. Gilbert. Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial. PLoS Comp. Biol, 11(2): e1003973. doi:10.1371/jour- nal.pcbi.1003973, 2015. 

     

  • Andrew J. Gartland , Sue Li , John McNevin, Georgia D. Tomaras, Raphael Gottardo, Holly Janes, Youyi Fong, Darril D. Morris , Dan E. Geraghty, Gustavo H. Kijak, Paul T. Edlefsen, Nicole Frahm, Branden B. Larsen, Sodsai Tovanabutra, Eric Sanders-Buell, Allan C. deCamp, Craig A. Magaret, Hasan Ahmed, Jodie P. Goodridge, Lennie Chen, Philip Konopa, S. Nariya, Jill N. Stoddard, Kim Wong, Hong Zhao ,Wenjie Deng, Brandon S. Maust, Meera Bose, Shana Howell, Adam Bates, Michelle Lazzaro, Annemarie O’Sullivan, Esther Lei, Andrea Bradfield, Grace Ibitamuno, Vatcharain Assawadarachai, Robert J. O’Connell , Mark S. deSouza, Sorchai Nitayaphan, Supachai Rerks-Ngarm, Merlin L. Robb, John Sidney, Alessandro Sette, Suzan Zolla-Pazner, David Montefiori, M. Juliana McElrath, Jim I. Mullins, Jerome H. Kim, Peter B. Gilbert and Tomer Hertz*. Analysis of HLA A*02 Association with Vaccine Efficacy in the RV144 HIV-1 Vaccine Trial. Journal of Virology, 88(15), 2014.

 

 

 

 

 

 

  • Morgane Rolland, Paul T Edlefsen, Brendan B Larsen, Sodsai Tovanabutra, Eric Sanders-Buell, Tomer Hertz, Allan C DeCamp, Chris Carrico, Sergey Menis, Craig A Magaret, Hasan Ahmed, Michal Juraska, Lennie Chen, Philip Konopa, Snehal Nariya, Julia N Stoddard, Kim Wong, Hong Zhao, Wenjie Deng, Brandon S Maust, Meera Bose, Shana Howell, Adam Bates, Michelle Lazzaro, Annemarie O'Sullivan, Esther Lei, Andrea Bradfield, Grace Ibitamuno, Vatcharain Assawadarachai, Robert J O'Connell, Mark S deSouza, Sorachai Nitayaphan, Supachai Rerks-Ngarm, Merlin L Robb, Jason S McLellan, Ivelin Georgiev, Peter D Kwong, Jonathan M Carlson, Nelson L Michael, William R Schief, Peter B Gilbert, James I Mullins and Jerome H Kim. Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2Nature, 490, 417--420, 2012.

 

 

 

  • Guang Lan Zhang, Hifzur Rahman Ansari, Phil Bradley, Gavin C Cawley, Tomer Hertz, Xihao Hu, Nebojsa Jojic, Yohan Kim, Oliver Kohlbacher, Ole Lund, Claus Lundegaard, Craig A Magaret, Morten Nielsen, Harris Papadopoulos, G P S Raghava, Vider-Shalit Tal, Li C Xue, Chen Yanover, Shanfeng Zhu, Michael T Rock, James E Crowe Jr., Christos Panayiotou, Marios M Polycarpou, Wlodzisaw Duch and Vladimir Brusic. Machine learning competition in immunology -- Prediction of HLA class I binding peptides, Journal of immunological methods, 374, 1--4, 2011.

 

 

 

 

 

 

 

 

  • Rubi Hammer, Tomer Hertz, Shaul Hochstein and Daphna Weinshall. Classification with Positive and Negative Equivalence onstraints: Theory, Computation and Human ExperimentsBVAI, 264-276, 2007.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

  • Twitter Round

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